Getting started
Background
Usage
Utilities
bcftbx Library
bcftbx
bcftbx.IlluminaData
bcftbx.SolidData
bcftbx.Experiment
bcftbx.FASTQFile
bcftbx.JobRunner
bcftbx.Pipeline
bcftbx.Md5sum
bcftbx.platforms
bcftbx.TabFile
bcftbx.simple_xls
bcftbx.Spreadsheet
bcftbx.cmdparse
bcftbx.qc
bcftbx.htmlpagewriter
bcftbx.utils
bcftbx.ngsutils
Experiment
ExperimentList
LinkNames
FastqAttributes
FastqIterator
FastqRead
SequenceIdentifier
fastqs_are_pair()
get_fastq_file_handle()
nreads()
BaseJobRunner
GEJobRunner
ResourceLock
SimpleJobRunner
fetch_runner()
Md5CheckReporter
Md5Checker
md5sum()
get_run_completion_files()
get_sequencer_platform()
list_platforms()
TabDataLine
TabFile
TabFileIterator
simple_xls
Spreadsheet
CommandParser
add_arg()
add_debug_option()
add_dry_run_option()
add_no_save_option()
add_nprocessors_option()
add_runner_option()
bcftbx.qc.report
HTMLPageWriter
PNGBase64Encoder