genomics-bcftbx
stable
Installation and set up
Usage
1. Reference data preparation
2. Preparing Illumina Data for analysis
3. Preparing SOLiD Data for analysis
4. QC Protocols
5. General Utilities
Command Reference
bcftbx
Reference
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genomics-bcftbx
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Usage
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Usage
ΒΆ
The package provides utilities to support specific bioinformatics tasks
1. Reference data preparation
1.1. Genome sequence data and indexes
1.2.
.info
metadata files
1.3. Generate indexes for mapping software
2. Preparing Illumina Data for analysis
2.1. Background
2.2. FASTQ generation and analysis directory setup
2.3. Troubleshooting bcl to FASTQ conversion
3. Preparing SOLiD Data for analysis
3.1. Background
3.2. Handling the SOLiD data
3.3. Preparing analysis directories
3.4. Generate XLS spreadsheet entry
4. QC Protocols
4.1. Overview
4.2. QC for Illumina sequencing data
4.3. QC for SOLiD sequencing data
5. General Utilities
5.1. Checking files and directories using MD5 sums
5.2. Checking symbolic links
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v: stable
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