Requirements

Supported Python versions

The package consists predominantly of code written in Python, and the following versions are supported:

• Python 3.8

• Python 3.9

• Python 3.10

• Python 3.11

• Python 3.12

Older Python 3 versions may also still work but are no longer included in the automated tests.

Software dependencies

Some of the utilities also use 3rd-party software packages, including:

• STAR https://github.com/alexdobin/STAR

Other utilities perform post-processing of output from the following external software packages:

• MACS https://github.com/macs3-project/MACS

• bowtie2 http://bowtie-bio.sourceforge.net/bowtie2/index.shtml