genomics-bcftbx: library and utilities for NGS and genomic bioinformatics
=========================================================================

``genomics-bcftbx`` is a Python library (``bcftbx``) and set of utility
programs and scripts developed to support NGS and genomics-related
bioinformatics within the
`Bioinformatics Core Facility <https://www.bmh.manchester.ac.uk/research/facilities/bioinformatics/>`_
of the Faculty of Biology, Medicine and Health (FBMH) at the
`University of Manchester <https://www.manchester.ac.uk/>`_ (UoM).

.. toctree::
   :maxdepth: 1
   :caption: Getting started

   overview
   requirements
   install

.. toctree::
   :maxdepth: 2
   :caption: Background

   background/illumina
   background/solid

.. toctree::
   :maxdepth: 2
   :caption: Usage

   usage/seq_data
   usage/ngs
   usage/fastq
   usage/fasta
   usage/microarray
   usage/general_utils

.. toctree::
   :maxdepth: 2
   :caption: Utilities

   reference

.. toctree::
   :maxdepth: 2
   :caption: bcftbx Library

   bcftbx

.. toctree::
   :maxdepth: 1

   changes