genomics-bcftbx: library and utilities for NGS and genomic bioinformatics
genomics-bcftbx
is a Python library (bcftbx
) and set of utility
programs and scripts developed to support NGS and genomics-related
bioinformatics within the
Bioinformatics Core Facility
of the Faculty of Biology, Medicine and Health (FBMH) at the
University of Manchester (UoM).
- Command reference
- analyse_solid_run.py
- annotate_probesets.py
- best_exons.py
- bowtie_mapping_stats.py
- extract_reads.py
- fastq_strand.py
- log_seq_data.sh
- make_macs_xls.py
- make_macs2_xls.py
- manage_seqs.py
- md5checker.py
- prep_sample_sheet.py
- reorder_fasta.py
- sam2soap.py
- split_fasta.py
- split_fastq.py
- verify_paired.py
- xrorthologs.py